CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1531 rna-evm.model.Chr12.1531 Chr12 48314542 48322176 PREDICTED: EF-hand calcium-binding domain-containing protein 1 GO:0005509 K27179
gene-evm.TU.Chr12.1533 rna-evm.model.Chr12.1533 Chr12 48352498 48369520 PREDICTED: Formimidoyltransferase-cyclodeaminase GO:0003824;GO:0005542;GO:0016740;GO:0044237 K13990
gene-evm.TU.Chr12.1536 rna-evm.model.Chr12.1536 Chr12 48614224 48619378 PREDICTED: Aquaporin-11 nan K09884
gene-evm.TU.Chr12.1537 rna-evm.model.Chr12.1537 Chr12 48619422 48675232 PREDICTED: DNA-directed RNA polymerase I subunit RPA2 GO:0003677;GO:0003899;GO:0005634;GO:0006351;GO:0032549 K03002
gene-evm.TU.Chr12.1538 rna-evm.model.Chr12.1538 Chr12 48712587 48716142 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr12.1539 rna-evm.model.Chr12.1539 Chr12 48716261 48717403 uncharacterized protein nan nan
gene-evm.TU.Chr12.154 rna-evm.model.Chr12.154 Chr12 4904637 4924895 PREDICTED: Neuropilin and tolloid-like protein 2 GO:0005515 K08670
gene-evm.TU.Chr12.1542 rna-evm.model.Chr12.1542 Chr12 48743107 48751830 PREDICTED: palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] GO:0003676 K24496
gene-evm.TU.Chr12.1544 rna-evm.model.Chr12.1544 Chr12 48836972 48843500 PREDICTED: potassium large conductance calcium-activated channel subfamily M alpha member 1 nan nan
gene-evm.TU.Chr12.1545 rna-evm.model.Chr12.1545 Chr12 48854908 48859834 PREDICTED: elongation factor 2 kinase [EC:2.7.11.20] nan nan

For more detailed data, you can explore the Download section to access the full dataset.