CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1479 rna-evm.model.Chr12.1479 Chr12 47074824 47079152 PREDICTED: Uncharacterized protein KIAA1958 nan K04763
gene-evm.TU.Chr12.148 rna-evm.model.Chr12.148 Chr12 4771026 4775475 PREDICTED: CLUMA_CG015344, nan K18716
gene-evm.TU.Chr12.1480 rna-evm.model.Chr12.1480 Chr12 47079926 47093071 PREDICTED: Cell surface hyaluronidase nan K22144
gene-evm.TU.Chr12.1481 rna-evm.model.Chr12.1481 Chr12 47110505 47132214 PREDICTED: Cell surface hyaluronidase nan K22144
gene-evm.TU.Chr12.1482 rna-evm.model.Chr12.1482 Chr12 47133432 47143230 PREDICTED: Solute carrier family 23 member 1 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.1483 rna-evm.model.Chr12.1483 Chr12 47144845 47150971 PREDICTED: Solute carrier family 23 member 2 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.1484 rna-evm.model.Chr12.1484 Chr12 47165003 47200232 PREDICTED: Serine/threonine-protein kinase Nek10 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K20879
gene-evm.TU.Chr12.1485 rna-evm.model.Chr12.1485 Chr12 47209088 47211395 PREDICTED: UPF0565 protein C2orf69 homolog nan nan
gene-evm.TU.Chr12.1486 rna-evm.model.Chr12.1486 Chr12 47211470 47225419 PREDICTED: Methylmalonic aciduria and homocystinuria type D homolog, mitochondrial GO:0009235 K26006
gene-evm.TU.Chr12.1487 rna-evm.model.Chr12.1487 Chr12 47226764 47251563 PREDICTED: Nuclease EXOG, mitochondrial GO:0003676;GO:0016787;GO:0046872 K15050

For more detailed data, you can explore the Download section to access the full dataset.