CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1415 rna-evm.model.Chr12.1415 Chr12 45487625 45495055 PREDICTED: potassium large conductance calcium-activated channel subfamily M alpha member 1 nan K05461
gene-evm.TU.Chr12.1416 rna-evm.model.Chr12.1416 Chr12 45501654 45507029 uncharacterized protein nan nan
gene-evm.TU.Chr12.1417 rna-evm.model.Chr12.1417 Chr12 45516612 45543133 PREDICTED: Natural resistance-associated macrophage protein 2 GO:0016020;GO:0030001;GO:0046873 K12347
gene-evm.TU.Chr12.1418 rna-evm.model.Chr12.1418 Chr12 45544905 45551037 PREDICTED: Alpha-aspartyl dipeptidase GO:0006508;GO:0008236 K05995
gene-evm.TU.Chr12.1419 rna-evm.model.Chr12.1419 Chr12 45558852 45564187 uncharacterized protein nan K24775
gene-evm.TU.Chr12.1420 rna-evm.model.Chr12.1420 Chr12 45578902 45588687 PREDICTED: msx2-interacting protein-like nan K03899
gene-evm.TU.Chr12.1421 rna-evm.model.Chr12.1421 Chr12 45589280 45611469 PREDICTED: Mitogen-activated protein kinase kinase kinase 14 GO:0004672;GO:0005524;GO:0006468 K04466
gene-evm.TU.Chr12.1422 rna-evm.model.Chr12.1422 Chr12 45653788 45693367 PREDICTED: DNA-directed RNA polymerase I subunit RPA2 GO:0003677;GO:0003899;GO:0005634;GO:0006351;GO:0032549 K03002
gene-evm.TU.Chr12.1423 rna-evm.model.Chr12.1423 Chr12 45693411 45698963 PREDICTED: Aquaporin-11 nan K09884
gene-evm.TU.Chr12.1426 rna-evm.model.Chr12.1426 Chr12 45822796 45823703 PREDICTED: reverse transcriptase family protein, partial nan nan

For more detailed data, you can explore the Download section to access the full dataset.