CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1427 rna-evm.model.Chr12.1427 Chr12 45823798 45825855 PREDICTED: Probable RNA-directed DNA polymerase from transposon X-element nan K01142
gene-evm.TU.Chr12.1429 rna-evm.model.Chr12.1429 Chr12 45858945 45859699 uncharacterized protein nan nan
gene-evm.TU.Chr12.143 rna-evm.model.Chr12.143 Chr12 4719980 4725735 PREDICTED: piggyBac transposable element-derived protein 2-like nan nan
gene-evm.TU.Chr12.1430 rna-evm.model.Chr12.1430 Chr12 45862094 45863190 PREDICTED: ESCRT-I complex subunit TSG101 GO:0003677;GO:0006310;GO:0015074 K10804
gene-evm.TU.Chr12.1433 rna-evm.model.Chr12.1433 Chr12 45987056 45988213 PREDICTED: trichohyalin nan nan
gene-evm.TU.Chr12.1434 rna-evm.model.Chr12.1434 Chr12 46011460 46035426 PREDICTED: Ras-related protein Ral-A GO:0003924;GO:0005525;GO:0007165;GO:0016020 K07834
gene-evm.TU.Chr12.1435 rna-evm.model.Chr12.1435 Chr12 46069549 46071977 PREDICTED: Kinase D-interacting substrate of 220 kDa B GO:0005515 K04984
gene-evm.TU.Chr12.1436 rna-evm.model.Chr12.1436.2 Chr12 46086179 46096846 PREDICTED: Transformer-2 protein homolog beta GO:0003676 K12897
gene-evm.TU.Chr12.1437 rna-evm.model.Chr12.1437 Chr12 46099245 46121992 PREDICTED: Little elongation complex subunit 2 GO:0008023 K26144
gene-evm.TU.Chr12.1438 rna-evm.model.Chr12.1438 Chr12 46125515 46152594 PREDICTED: UBX domain-containing protein 7 GO:0005515 K24348

For more detailed data, you can explore the Download section to access the full dataset.