CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1392 rna-evm.model.Chr12.1392 Chr12 44265413 44284350 PREDICTED: DnaJ homolog subfamily C member 1 nan K09521
gene-evm.TU.Chr12.1393 rna-evm.model.Chr12.1393.1 Chr12 44301238 44433897 PREDICTED: 3-keto-steroid reductase nan K13373
gene-evm.TU.Chr12.1394 rna-evm.model.Chr12.1394 Chr12 44345420 44468322 PREDICTED: ankyrin repeat domain-containing protein 50 nan K04931
gene-evm.TU.Chr12.1395 rna-evm.model.Chr12.1395 Chr12 44501261 44506579 PREDICTED: tachykinin receptor 3 nan nan
gene-evm.TU.Chr12.1396 rna-evm.model.Chr12.1396 Chr12 44513203 44535592 PREDICTED: Beta-2 adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04141
gene-evm.TU.Chr12.1397 rna-evm.model.Chr12.1397 Chr12 44597849 44618861 PREDICTED: TBC1 domain family member 10 nan nan
gene-evm.TU.Chr12.1398 rna-evm.model.Chr12.1398 Chr12 44618917 44636056 PREDICTED: Aromatic-amino-acid aminotransferase 1 GO:0009058;GO:0030170 K05825
gene-evm.TU.Chr12.1399 rna-evm.model.Chr12.1399 Chr12 44658986 44671606 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525;GO:0042981 K04399
gene-evm.TU.Chr12.14 rna-evm.model.Chr12.14 Chr12 308616 328613 PREDICTED: Interferon-induced protein 44-like GO:0005525 K06946
gene-evm.TU.Chr12.140 rna-evm.model.Chr12.140 Chr12 4702366 4708172 PREDICTED: Zinc finger and BTB domain-containing protein 14 GO:0003676 K24502

For more detailed data, you can explore the Download section to access the full dataset.