CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1400 rna-evm.model.Chr12.1400 Chr12 44696254 44717010 PREDICTED: PDF receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K22738
gene-evm.TU.Chr12.1403 rna-evm.model.Chr12.1403 Chr12 45036967 45037999 uncharacterized protein nan K01142
gene-evm.TU.Chr12.1406 rna-evm.model.Chr12.1406 Chr12 45259025 45263763 uncharacterized protein nan nan
gene-evm.TU.Chr12.1408 rna-evm.model.Chr12.1408 Chr12 45314692 45315530 PREDICTED: Insoluble matrix shell protein 3 nan K06265
gene-evm.TU.Chr12.1409 rna-evm.model.Chr12.1409 Chr12 45329783 45331771 PREDICTED: Insoluble matrix shell protein 3 nan nan
gene-evm.TU.Chr12.1410 rna-evm.model.Chr12.1410 Chr12 45336908 45343649 PREDICTED: Insoluble matrix shell protein 3 nan K16139
gene-evm.TU.Chr12.1411 rna-evm.model.Chr12.1411 Chr12 45344737 45346523 PREDICTED: Insoluble matrix shell protein 3 nan nan
gene-evm.TU.Chr12.1412 rna-evm.model.Chr12.1412 Chr12 45446526 45451383 PREDICTED: elongation factor 2 kinase [EC:2.7.11.20] nan nan
gene-evm.TU.Chr12.1413 rna-evm.model.Chr12.1413 Chr12 45460469 45464325 PREDICTED: potassium large conductance calcium-activated channel subfamily M alpha member 1 nan nan
gene-evm.TU.Chr12.1414 rna-evm.model.Chr12.1414 Chr12 45466347 45476648 PREDICTED: elongation factor 2 kinase [EC:2.7.11.20] nan K09683

For more detailed data, you can explore the Download section to access the full dataset.