CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1356 rna-evm.model.Chr12.1356 Chr12 43251334 43255288 PREDICTED: EMILIN-1 nan K23284
gene-evm.TU.Chr12.1357 rna-evm.model.Chr12.1357 Chr12 43286078 43297560 PREDICTED: Alpha-tocopherol transfer protein-like nan K19625
gene-evm.TU.Chr12.1358 rna-evm.model.Chr12.1358 Chr12 43301252 43310649 PREDICTED: Alpha-tocopherol transfer protein-like nan K24455
gene-evm.TU.Chr12.136 rna-evm.model.Chr12.136 Chr12 4637347 4643095 uncharacterized protein nan nan
gene-evm.TU.Chr12.1360 rna-evm.model.Chr12.1360 Chr12 43330623 43334493 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr12.1361 rna-evm.model.Chr12.1361 Chr12 43347985 43350753 PREDICTED: plasminogen [EC:3.4.21.7] nan K10101
gene-evm.TU.Chr12.1362 rna-evm.model.Chr12.1362 Chr12 43364622 43368845 PREDICTED: Protein UXT GO:0000122;GO:0003714 K26537
gene-evm.TU.Chr12.1363 rna-evm.model.Chr12.1363 Chr12 43381533 43383694 PREDICTED: plasminogen [EC:3.4.21.7] nan K26625
gene-evm.TU.Chr12.1364 rna-evm.model.Chr12.1364 Chr12 43384524 43387716 PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase-like nan K24674
gene-evm.TU.Chr12.1365 rna-evm.model.Chr12.1365 Chr12 43395511 43399133 PREDICTED: plasminogen [EC:3.4.21.7] nan nan

For more detailed data, you can explore the Download section to access the full dataset.