CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1332 rna-evm.model.Chr12.1332 Chr12 42625770 42630791 PREDICTED: Probable prolyl 4-hydroxylase 4 GO:0005506;GO:0016491;GO:0016705;GO:0031418;GO:0055114 K00472
gene-evm.TU.Chr12.1339_evm.TU.Chr12.1340 rna-evm.model.Chr12.1339_evm.model.Chr12.1340 Chr12 42648954 42692172 PREDICTED: Glucocorticoid-induced transcript 1 protein nan nan
gene-evm.TU.Chr12.1341 rna-evm.model.Chr12.1341 Chr12 42703046 42745123 PREDICTED: Ankyrin repeat and zinc finger domain-containing protein 1 GO:0005515 K26089
gene-evm.TU.Chr12.1342 rna-evm.model.Chr12.1342 Chr12 42747569 42759560 PREDICTED: L-galactose dehydrogenase GO:0016491;GO:0055114 K23003
gene-evm.TU.Chr12.1343 rna-evm.model.Chr12.1343 Chr12 42767355 42773091 PREDICTED: Cation-dependent mannose-6-phosphate receptor nan K10089
gene-evm.TU.Chr12.1344 rna-evm.model.Chr12.1344 Chr12 42773856 42776858 uncharacterized protein nan K23489
gene-evm.TU.Chr12.1346 rna-evm.model.Chr12.1346.1 Chr12 42920028 42972494 PREDICTED: Insulin-like growth factor 2 mRNA-binding protein 2 GO:0003676;GO:0003723;GO:0003729 K17392
gene-evm.TU.Chr12.1349 rna-evm.model.Chr12.1349 Chr12 43091974 43100617 PREDICTED: zinc finger homeobox protein 4-like GO:0003676 K23710
gene-evm.TU.Chr12.135 rna-evm.model.Chr12.135 Chr12 4612004 4620159 uncharacterized protein nan K13217
gene-evm.TU.Chr12.1350 rna-evm.model.Chr12.1350 Chr12 43113931 43129684 PREDICTED: C1q-related factor nan K23284

For more detailed data, you can explore the Download section to access the full dataset.