CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1321_evm.TU.Chr12.1318 rna-evm.model.Chr12.1321_evm.model.Chr12.1318 Chr12 42166124 42258447 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr12.1322 rna-evm.model.Chr12.1322 Chr12 42273651 42289671 PREDICTED: complement component 4 nan K02383
gene-evm.TU.Chr12.1324 rna-evm.model.Chr12.1324 Chr12 42335561 42349898 PREDICTED: Molluscan insulin-related peptide 5 GO:0005179;GO:0005576 K04526
gene-evm.TU.Chr12.1325 rna-evm.model.Chr12.1325 Chr12 42376119 42377789 PREDICTED: Jerky protein homolog-like GO:0003676 K26274
gene-evm.TU.Chr12.1326 rna-evm.model.Chr12.1326 Chr12 42487349 42494199 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K06679
gene-evm.TU.Chr12.1327 rna-evm.model.Chr12.1327 Chr12 42522105 42548288 uncharacterized protein nan K16778
gene-evm.TU.Chr12.1329 rna-evm.model.Chr12.1329 Chr12 42572722 42576021 PREDICTED: Myosin light chain kinase, smooth muscle GO:0008270 K12026
gene-evm.TU.Chr12.133 rna-evm.model.Chr12.133 Chr12 4405668 4407320 PREDICTED: Heparan sulfate glucosamine 3-O-sulfotransferase 2 GO:0008146 K07809
gene-evm.TU.Chr12.1330 rna-evm.model.Chr12.1330 Chr12 42578978 42586090 PREDICTED: ASNSD1 upstream open reading frame protein nan K05849
gene-evm.TU.Chr12.1331 rna-evm.model.Chr12.1331 Chr12 42587578 42618630 PREDICTED: Mediator of RNA polymerase II transcription subunit 1 GO:0003712;GO:0006357;GO:0016592 K15144

For more detailed data, you can explore the Download section to access the full dataset.