CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1309 rna-evm.model.Chr12.1309.1 Chr12 41671426 41680683 uncharacterized protein nan K20282
gene-evm.TU.Chr12.131 rna-evm.model.Chr12.131 Chr12 4325763 4375619 PREDICTED: Kinesin-like protein KIF15 GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10400
gene-evm.TU.Chr12.1310 rna-evm.model.Chr12.1310 Chr12 41693383 41700472 uncharacterized protein nan nan
gene-evm.TU.Chr12.1311 rna-evm.model.Chr12.1311 Chr12 41801178 41819874 PREDICTED: Transposable element Tc3 transposase nan nan
gene-evm.TU.Chr12.1312 rna-evm.model.Chr12.1312 Chr12 41840626 41859468 PREDICTED: INO80 complex subunit C GO:0006338;GO:0031011 K11667
gene-evm.TU.Chr12.1313 rna-evm.model.Chr12.1313 Chr12 41869367 41913906 PREDICTED: SCO-spondin GO:0005515;GO:0007399;GO:0030154 K24434
gene-evm.TU.Chr12.1314 rna-evm.model.Chr12.1314 Chr12 41917275 41928566 PREDICTED: Elongation factor 1-beta GO:0003746;GO:0006414 K03232
gene-evm.TU.Chr12.1315 rna-evm.model.Chr12.1315 Chr12 41949068 41963042 PREDICTED: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial GO:0009055;GO:0016491;GO:0016651;GO:0051536;GO:0055114 K03934
gene-evm.TU.Chr12.1316 rna-evm.model.Chr12.1316 Chr12 41963820 42134671 PREDICTED: Dynein heavy chain 8, axonemal GO:0003777;GO:0005524;GO:0007018;GO:0030286 K10408
gene-evm.TU.Chr12.1319 rna-evm.model.Chr12.1319 Chr12 42219035 42223376 PREDICTED: LOW QUALITY PROTEIN: heat shock 70 kDa protein 12A-like nan K04046

For more detailed data, you can explore the Download section to access the full dataset.