CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1298 rna-evm.model.Chr12.1298 Chr12 41436614 41455427 PREDICTED: Bardet-Biedl syndrome 5 protein homolog GO:0034464 K16748
gene-evm.TU.Chr12.1299 rna-evm.model.Chr12.1299 Chr12 41457905 41479695 PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like GO:0008033;GO:0017150;GO:0046872;GO:0050660;GO:0055114 K05544
gene-evm.TU.Chr12.13 rna-evm.model.Chr12.13 Chr12 302189 302648 PREDICTED: Interferon-induced protein 44-like nan K10429
gene-evm.TU.Chr12.130 rna-evm.model.Chr12.130 Chr12 4322293 4325114 PREDICTED: importin-4 nan K11703
gene-evm.TU.Chr12.1301 rna-evm.model.Chr12.1301 Chr12 41488339 41495866 PREDICTED: complement component 4 nan K10063
gene-evm.TU.Chr12.1302 rna-evm.model.Chr12.1302 Chr12 41505719 41524228 PREDICTED: Apoptosis regulator R1 (Fragment) GO:0042981 K02163
gene-evm.TU.Chr12.1304 rna-evm.model.Chr12.1304 Chr12 41536598 41540061 PREDICTED: Bcl-2-like protein 2 GO:0042981 K02163
gene-evm.TU.Chr12.1305 rna-evm.model.Chr12.1305 Chr12 41586191 41595581 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr12.1307 rna-evm.model.Chr12.1307 Chr12 41605317 41605811 PREDICTED: organic solute transporter subunit alpha nan nan
gene-evm.TU.Chr12.1308 rna-evm.model.Chr12.1308 Chr12 41613320 41626578 uncharacterized protein nan K22810

For more detailed data, you can explore the Download section to access the full dataset.