CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1264 rna-evm.model.Chr12.1264 Chr12 40855777 40856365 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K24675
gene-evm.TU.Chr12.1266 rna-evm.model.Chr12.1266 Chr12 40857708 40866704 PREDICTED: Thiamin pyrophosphokinase 1 GO:0004788;GO:0005524;GO:0009229;GO:0030975 K00949
gene-evm.TU.Chr12.1267 rna-evm.model.Chr12.1267 Chr12 40874398 40875262 PREDICTED: THAP domain-containing protein 11 nan K23222
gene-evm.TU.Chr12.1268 rna-evm.model.Chr12.1268 Chr12 40876556 40878506 PREDICTED: PHD finger protein ING1 nan K19197
gene-evm.TU.Chr12.1272 rna-evm.model.Chr12.1272 Chr12 40990015 40990323 PREDICTED: Mariner Mos1 transposase nan K21406
gene-evm.TU.Chr12.1273 rna-evm.model.Chr12.1273 Chr12 41022138 41033013 uncharacterized protein nan nan
gene-evm.TU.Chr12.1275 rna-evm.model.Chr12.1275 Chr12 41045140 41045763 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr12.1276 rna-evm.model.Chr12.1276 Chr12 41060314 41061483 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr12.1277 rna-evm.model.Chr12.1277 Chr12 41080425 41083690 uncharacterized protein nan K22288
gene-evm.TU.Chr12.1278 rna-evm.model.Chr12.1278 Chr12 41087375 41096465 PREDICTED: Uncharacterized protein YfbL nan K19701

For more detailed data, you can explore the Download section to access the full dataset.