CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.125 rna-evm.model.Chr12.125 Chr12 4310074 4310991 PREDICTED: Transmembrane protein 70 homolog, mitochondrial nan K17966
gene-evm.TU.Chr12.1250 rna-evm.model.Chr12.1250 Chr12 40102879 40113299 PREDICTED: tripartite motif-containing protein 35 GO:0003697;GO:0006301;GO:0006513;GO:0061630 K08742
gene-evm.TU.Chr12.1251 rna-evm.model.Chr12.1251 Chr12 40114633 40116548 PREDICTED: Uncharacterized protein PFD1115c nan K06595
gene-evm.TU.Chr12.1253 rna-evm.model.Chr12.1253 Chr12 40124996 40131609 PREDICTED: Radical S-adenosyl methionine domain-containing protein 2 nan K15045
gene-evm.TU.Chr12.1254 rna-evm.model.Chr12.1254 Chr12 40140360 40226896 PREDICTED: Mucin-6 GO:0005515 K24434
gene-evm.TU.Chr12.1255 rna-evm.model.Chr12.1255 Chr12 40354660 40402975 PREDICTED: Ecdysone receptor GO:0003677;GO:0003700;GO:0003707;GO:0004879;GO:0005634;GO:0006355;GO:0008270;GO:0035076;GO:0035100;GO:0043565 K14034
gene-evm.TU.Chr12.1258_evm.TU.Chr12.1259 rna-evm.model.Chr12.1258_evm.model.Chr12.1259 Chr12 40627944 40649627 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr12.1260 rna-evm.model.Chr12.1260 Chr12 40665234 40669970 uncharacterized protein nan K11720
gene-evm.TU.Chr12.1261 rna-evm.model.Chr12.1261 Chr12 40675615 40678883 uncharacterized protein nan K02277
gene-evm.TU.Chr12.1262 rna-evm.model.Chr12.1262 Chr12 40685003 40748458 uncharacterized protein nan K19701

For more detailed data, you can explore the Download section to access the full dataset.