CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1239 rna-evm.model.Chr12.1239 Chr12 39730941 39759774 PREDICTED: Spermatogenesis-associated protein 48 nan K25539
gene-evm.TU.Chr12.124 rna-evm.model.Chr12.124 Chr12 4237934 4238182 uncharacterized protein nan K13596
gene-evm.TU.Chr12.1240 rna-evm.model.Chr12.1240 Chr12 39760107 39787836 PREDICTED: Probable C-mannosyltransferase DPY19L1 GO:0016020 K24553
gene-evm.TU.Chr12.1241 rna-evm.model.Chr12.1241 Chr12 39794026 39801461 PREDICTED: Organic cation transporter protein GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr12.1243 rna-evm.model.Chr12.1243 Chr12 39813548 39818349 PREDICTED: Fibropellin-3 GO:0005509 K16681
gene-evm.TU.Chr12.1244 rna-evm.model.Chr12.1244 Chr12 39831101 39846895 PREDICTED: tripartite motif-containing protein 35 GO:0003697;GO:0006301;GO:0006513;GO:0061630 K08742
gene-evm.TU.Chr12.1245 rna-evm.model.Chr12.1245 Chr12 39848651 39850296 PREDICTED: Uncharacterized protein PFD1115c nan nan
gene-evm.TU.Chr12.1246 rna-evm.model.Chr12.1246 Chr12 39854196 39860946 PREDICTED: Radical S-adenosyl methionine domain-containing protein 2 GO:0003824;GO:0051536 K15045
gene-evm.TU.Chr12.1247 rna-evm.model.Chr12.1247 Chr12 39863966 39934453 PREDICTED: Hemicentin-1 GO:0005515 K24434
gene-evm.TU.Chr12.1248 rna-evm.model.Chr12.1248 Chr12 39938791 39964192 PREDICTED: SCO-spondin GO:0005515 K24434

For more detailed data, you can explore the Download section to access the full dataset.