CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1226 rna-evm.model.Chr12.1226 Chr12 39105973 39127134 PREDICTED: Zinc finger protein 184 GO:0003676 K09191
gene-evm.TU.Chr12.1228 rna-evm.model.Chr12.1228 Chr12 39263871 39285075 PREDICTED: Calcitonin receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04576
gene-evm.TU.Chr12.123 rna-evm.model.Chr12.123 Chr12 4231896 4232067 uncharacterized protein nan K08008
gene-evm.TU.Chr12.1231 rna-evm.model.Chr12.1231 Chr12 39598343 39605318 uncharacterized protein nan nan
gene-evm.TU.Chr12.1232 rna-evm.model.Chr12.1232 Chr12 39616233 39620673 PREDICTED: Failed axon connections homolog nan K21106
gene-evm.TU.Chr12.1233 rna-evm.model.Chr12.1233 Chr12 39622430 39623218 PREDICTED: Insoluble matrix shell protein 3 nan nan
gene-evm.TU.Chr12.1234 rna-evm.model.Chr12.1234 Chr12 39628587 39638499 PREDICTED: Putative amine oxidase [copper-containing] GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr12.1235 rna-evm.model.Chr12.1235 Chr12 39646215 39655028 PREDICTED: Putative amine oxidase [copper-containing] GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr12.1237 rna-evm.model.Chr12.1237 Chr12 39681498 39687329 uncharacterized protein nan K25539
gene-evm.TU.Chr12.1238 rna-evm.model.Chr12.1238 Chr12 39721011 39724350 uncharacterized protein nan K25539

For more detailed data, you can explore the Download section to access the full dataset.