CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1200 rna-evm.model.Chr12.1200 Chr12 38321514 38333947 PREDICTED: Bone morphogenetic protein 2 nan K21283
gene-evm.TU.Chr12.1201 rna-evm.model.Chr12.1201 Chr12 38352009 38359503 PREDICTED: Sarcoplasmic calcium-binding protein nan K06268
gene-evm.TU.Chr12.1202 rna-evm.model.Chr12.1202 Chr12 38381153 38382253 PREDICTED: KRAB domain-containing zinc finger protein nan K22804
gene-evm.TU.Chr12.1203 rna-evm.model.Chr12.1203 Chr12 38434855 38441844 PREDICTED: Protein Star nan K16381
gene-evm.TU.Chr12.1204 rna-evm.model.Chr12.1204 Chr12 38445346 38452709 uncharacterized protein nan K24521
gene-evm.TU.Chr12.1205 rna-evm.model.Chr12.1205 Chr12 38456646 38463798 PREDICTED: chordin nan K24521
gene-evm.TU.Chr12.1206 rna-evm.model.Chr12.1206 Chr12 38469792 38473981 PREDICTED: Sarcoplasmic calcium-binding protein nan K19695
gene-evm.TU.Chr12.1207 rna-evm.model.Chr12.1207 Chr12 38475341 38476879 PREDICTED: Sarcoplasmic calcium-binding protein nan K13412
gene-evm.TU.Chr12.1208 rna-evm.model.Chr12.1208 Chr12 38480492 38484111 PREDICTED: 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] GO:0016020 K26255
gene-evm.TU.Chr12.1209 rna-evm.model.Chr12.1209 Chr12 38492522 38507910 PREDICTED: 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] GO:0016020 K26255

For more detailed data, you can explore the Download section to access the full dataset.