CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1210 rna-evm.model.Chr12.1210 Chr12 38529966 38530690 PREDICTED: U3 small nucleolar RNA-associated protein 19 nan K05220
gene-evm.TU.Chr12.1211 rna-evm.model.Chr12.1211 Chr12 38537047 38550684 PREDICTED: Thiamin pyrophosphokinase 1 GO:0004788;GO:0005524;GO:0009229;GO:0030975 K00949
gene-evm.TU.Chr12.1213_evm.TU.Chr12.1215 rna-evm.model.Chr12.1213_evm.model.Chr12.1215 Chr12 38646559 38736007 PREDICTED: Uncharacterized protein YfbL nan K19701
gene-evm.TU.Chr12.1214 rna-evm.model.Chr12.1214 Chr12 38687316 38701781 PREDICTED: C-type lectin domain family 4 member F nan K10058
gene-evm.TU.Chr12.1216 rna-evm.model.Chr12.1216 Chr12 38754361 38755530 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr12.122 rna-evm.model.Chr12.122 Chr12 4225789 4225960 uncharacterized protein nan nan
gene-evm.TU.Chr12.1221 rna-evm.model.Chr12.1221 Chr12 38804927 38815165 PREDICTED: snRNA-activating protein complex subunit 1 nan K15208
gene-evm.TU.Chr12.1222 rna-evm.model.Chr12.1222 Chr12 38815267 38819574 PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase GO:0046983 K24674
gene-evm.TU.Chr12.1223 rna-evm.model.Chr12.1223 Chr12 38821004 38825037 PREDICTED: polycystic kidney disease protein 1-like 2 nan K11244
gene-evm.TU.Chr12.1225 rna-evm.model.Chr12.1225 Chr12 39098175 39103578 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.