CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1192 rna-evm.model.Chr12.1192 Chr12 38078826 38080832 PREDICTED: Ankyrin repeat, PH and SEC7 domain containing protein secG GO:0005515 K02580
gene-evm.TU.Chr12.1193 rna-evm.model.Chr12.1193 Chr12 38082409 38107821 PREDICTED: Cytochrome P450 3A25 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07424
gene-evm.TU.Chr12.1194 rna-evm.model.Chr12.1194 Chr12 38119812 38143603 uncharacterized protein nan K06747
gene-evm.TU.Chr12.1195 rna-evm.model.Chr12.1195 Chr12 38144714 38176458 PREDICTED: Vacuolar protein sorting-associated protein 41 homolog GO:0005515;GO:0006886;GO:0016192 K20184
gene-evm.TU.Chr12.1196 rna-evm.model.Chr12.1196 Chr12 38183803 38197113 PREDICTED: POU domain, class 6, transcription factor 2 GO:0003677;GO:0003700;GO:0006355 K09368
gene-evm.TU.Chr12.1197 rna-evm.model.Chr12.1197 Chr12 38229621 38240370 PREDICTED: Actin-fragmin kinase nan K23330
gene-evm.TU.Chr12.1198 rna-evm.model.Chr12.1198 Chr12 38273587 38285481 PREDICTED: Protein PLANT CADMIUM RESISTANCE 3 nan nan
gene-evm.TU.Chr12.1199 rna-evm.model.Chr12.1199 Chr12 38295821 38320460 PREDICTED: Succinate--hydroxymethylglutarate CoA-transferase GO:0003824 K18703
gene-evm.TU.Chr12.12 rna-evm.model.Chr12.12 Chr12 283753 293460 uncharacterized protein nan K27276
gene-evm.TU.Chr12.120 rna-evm.model.Chr12.120 Chr12 4098442 4107350 PREDICTED: SH3 domain-binding protein 5 GO:0035556 K23739

For more detailed data, you can explore the Download section to access the full dataset.