CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1176 rna-evm.model.Chr12.1176 Chr12 37812732 37834123 PREDICTED: Retinol dehydrogenase 16 GO:0003676;GO:0008270 K13369
gene-evm.TU.Chr12.1178 rna-evm.model.Chr12.1178 Chr12 37889778 37892804 PREDICTED: Dehydrogenase/reductase SDR family member 9 nan K13369
gene-evm.TU.Chr12.1182 rna-evm.model.Chr12.1182 Chr12 37922425 37924779 PREDICTED: Protein Star nan K16381
gene-evm.TU.Chr12.1183 rna-evm.model.Chr12.1183 Chr12 37929692 37933078 PREDICTED: Protein Star nan K16381
gene-evm.TU.Chr12.1185 rna-evm.model.Chr12.1185 Chr12 37939152 37939604 uncharacterized protein nan K23293
gene-evm.TU.Chr12.1186 rna-evm.model.Chr12.1186 Chr12 37946771 37950387 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr12.1188 rna-evm.model.Chr12.1188 Chr12 37989705 38012617 PREDICTED: Cytochrome P450 20A1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07435
gene-evm.TU.Chr12.1189 rna-evm.model.Chr12.1189 Chr12 38012641 38019955 PREDICTED: Leucine-rich repeat-containing protein 46 GO:0005515 K19753
gene-evm.TU.Chr12.1190 rna-evm.model.Chr12.1190 Chr12 38022752 38044990 PREDICTED: Cullin-2 GO:0006511;GO:0031625 K03870
gene-evm.TU.Chr12.1191 rna-evm.model.Chr12.1191 Chr12 38050075 38072464 PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 GO:0043248 K03036

For more detailed data, you can explore the Download section to access the full dataset.