CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1163 rna-evm.model.Chr12.1163 Chr12 37348078 37368918 PREDICTED: ATP-dependent RNA helicase DDX42 GO:0003676;GO:0005524 K12835
gene-evm.TU.Chr12.1164 rna-evm.model.Chr12.1164 Chr12 37372144 37379033 PREDICTED: Cartilage matrix protein nan K06238
gene-evm.TU.Chr12.1165 rna-evm.model.Chr12.1165 Chr12 37390473 37395845 uncharacterized protein nan K05852
gene-evm.TU.Chr12.1166 rna-evm.model.Chr12.1166 Chr12 37400767 37403611 PREDICTED: Transient receptor potential cation channel subfamily V member 6 GO:0005216;GO:0006811;GO:0016020 K04972
gene-evm.TU.Chr12.1168 rna-evm.model.Chr12.1168 Chr12 37472476 37476169 PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6 nan K13369
gene-evm.TU.Chr12.1169 rna-evm.model.Chr12.1169 Chr12 37601325 37601606 PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6 nan K13369
gene-evm.TU.Chr12.117 rna-evm.model.Chr12.117 Chr12 4038568 4047202 PREDICTED: Membrane primary amine oxidase GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr12.1170 rna-evm.model.Chr12.1170 Chr12 37626603 37631962 PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6 nan K13369
gene-evm.TU.Chr12.1171 rna-evm.model.Chr12.1171 Chr12 37636080 37647023 PREDICTED: Gamma-aminobutyric acid receptor subunit beta GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05194
gene-evm.TU.Chr12.1173 rna-evm.model.Chr12.1173 Chr12 37674947 37701549 PREDICTED: 3 beta-hydroxysteroid dehydrogenase dhs-16 nan K13369

For more detailed data, you can explore the Download section to access the full dataset.