CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1152 rna-evm.model.Chr12.1152 Chr12 37058253 37065083 PREDICTED: solute carrier family 15, member 5 nan K03088
gene-evm.TU.Chr12.1154 rna-evm.model.Chr12.1154 Chr12 37118238 37159379 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr12.1155 rna-evm.model.Chr12.1155 Chr12 37160432 37165962 PREDICTED: Transient receptor potential cation channel subfamily V member 6 GO:0005216;GO:0005515;GO:0006811;GO:0016020 K04972
gene-evm.TU.Chr12.1156 rna-evm.model.Chr12.1156 Chr12 37181347 37184419 uncharacterized protein nan K04975
gene-evm.TU.Chr12.1157 rna-evm.model.Chr12.1157 Chr12 37194365 37198086 PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6 nan K13369
gene-evm.TU.Chr12.1158 rna-evm.model.Chr12.1158 Chr12 37204306 37208830 PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6 nan K13369
gene-evm.TU.Chr12.116 rna-evm.model.Chr12.116 Chr12 4027656 4031418 PREDICTED: Amiloride-sensitive amine oxidase [copper-containing] GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr12.1160 rna-evm.model.Chr12.1160 Chr12 37307916 37309863 PREDICTED: KRAB domain-containing zinc finger protein nan K09228
gene-evm.TU.Chr12.1161 rna-evm.model.Chr12.1161 Chr12 37310193 37335963 PREDICTED: RNA-binding protein 33-like nan K25078
gene-evm.TU.Chr12.1162 rna-evm.model.Chr12.1162 Chr12 37336028 37343472 PREDICTED: Protein FAM221A nan K21609

For more detailed data, you can explore the Download section to access the full dataset.