CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1141 rna-evm.model.Chr12.1141 Chr12 36790191 36794363 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr12.1142 rna-evm.model.Chr12.1142 Chr12 36798931 36802871 PREDICTED: complement component 4 nan K05345
gene-evm.TU.Chr12.1143 rna-evm.model.Chr12.1143 Chr12 36815963 36858563 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 13 nan K00710
gene-evm.TU.Chr12.1144 rna-evm.model.Chr12.1144 Chr12 36859625 36860317 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.1145 rna-evm.model.Chr12.1145 Chr12 36860431 36860706 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.1147 rna-evm.model.Chr12.1147 Chr12 36898640 36898828 uncharacterized protein nan nan
gene-evm.TU.Chr12.1149 rna-evm.model.Chr12.1149 Chr12 36991646 36994824 PREDICTED: Uncharacterized protein KIAA1958 nan K24675
gene-evm.TU.Chr12.115 rna-evm.model.Chr12.115 Chr12 4017978 4024492 PREDICTED: Tripartite motif-containing protein 3 nan K11997
gene-evm.TU.Chr12.1150 rna-evm.model.Chr12.1150 Chr12 37043152 37047456 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr12.1151 rna-evm.model.Chr12.1151 Chr12 37053961 37054161 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.