CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.113 rna-evm.model.Chr12.113 Chr12 3965980 3970318 PREDICTED: C-type lectin domain family 17, member A nan K06468
gene-evm.TU.Chr12.1130 rna-evm.model.Chr12.1130 Chr12 36462187 36477251 PREDICTED: CCR4-NOT transcription complex subunit 9 GO:0006402;GO:0030014 K12606
gene-evm.TU.Chr12.1131 rna-evm.model.Chr12.1131 Chr12 36484971 36498646 PREDICTED: Rho-related GTP-binding protein RhoE GO:0003924;GO:0005525;GO:0007264 K07859
gene-evm.TU.Chr12.1133 rna-evm.model.Chr12.1133 Chr12 36517468 36520217 PREDICTED: matrilin-3 nan K05449
gene-evm.TU.Chr12.1134 rna-evm.model.Chr12.1134 Chr12 36524950 36527758 PREDICTED: Partner of bursicon GO:0001664;GO:0005184;GO:0031395 K10955
gene-evm.TU.Chr12.1136 rna-evm.model.Chr12.1136 Chr12 36602227 36619118 PREDICTED: Glutathione S-transferase P 1 GO:0005515 K04097
gene-evm.TU.Chr12.1137 rna-evm.model.Chr12.1137 Chr12 36628965 36643882 PREDICTED: Zinc finger protein 835 GO:0003676 K09228
gene-evm.TU.Chr12.1139 rna-evm.model.Chr12.1139 Chr12 36780149 36780329 uncharacterized protein nan nan
gene-evm.TU.Chr12.114 rna-evm.model.Chr12.114 Chr12 3997593 4013516 PREDICTED: Methylmalonyl-CoA mutase, mitochondrial GO:0016866;GO:0031419;GO:0046872 K01847
gene-evm.TU.Chr12.1140 rna-evm.model.Chr12.1140 Chr12 36784617 36787376 PREDICTED: complement component 4 nan K11102

For more detailed data, you can explore the Download section to access the full dataset.