CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1119 rna-evm.model.Chr12.1119 Chr12 36066181 36066600 PREDICTED: Perlucin-like protein nan K06560
gene-evm.TU.Chr12.112 rna-evm.model.Chr12.112 Chr12 3941571 3949516 PREDICTED: salivary glue protein Sgs-3-like nan K17513
gene-evm.TU.Chr12.1121 rna-evm.model.Chr12.1121 Chr12 36085644 36096491 PREDICTED: Transcription elongation factor spt5 nan K01406
gene-evm.TU.Chr12.1122 rna-evm.model.Chr12.1122 Chr12 36107562 36121921 PREDICTED: Lysosomal acid phosphatase nan K14410
gene-evm.TU.Chr12.1123 rna-evm.model.Chr12.1123 Chr12 36125046 36126881 PREDICTED: Ankyrin repeat and SOCS box protein 13 GO:0005515 K10335
gene-evm.TU.Chr12.1124 rna-evm.model.Chr12.1124 Chr12 36237740 36245549 PREDICTED: crossover junction endonuclease EME1 [EC:3.1.22.-] nan nan
gene-evm.TU.Chr12.1125 rna-evm.model.Chr12.1125 Chr12 36279547 36280979 PREDICTED: Uncharacterized protein KIAA1958 homolog nan K24675
gene-evm.TU.Chr12.1126 rna-evm.model.Chr12.1126 Chr12 36424121 36431598 uncharacterized protein nan nan
gene-evm.TU.Chr12.1127 rna-evm.model.Chr12.1127 Chr12 36431956 36444941 PREDICTED: Parathyroid hormone/parathyroid hormone-related peptide receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04585
gene-evm.TU.Chr12.1129 rna-evm.model.Chr12.1129 Chr12 36460597 36461157 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K14530

For more detailed data, you can explore the Download section to access the full dataset.