CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1109 rna-evm.model.Chr12.1109 Chr12 35714428 35723061 uncharacterized protein nan nan
gene-evm.TU.Chr12.111 rna-evm.model.Chr12.111 Chr12 3877483 3935296 PREDICTED: Ceramide synthase 4 GO:0003677;GO:0016020 K24621
gene-evm.TU.Chr12.1110 rna-evm.model.Chr12.1110 Chr12 35784367 35784750 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr12.1111 rna-evm.model.Chr12.1111 Chr12 35789980 35838065 PREDICTED: Transposable element Tc1 transposase GO:0004930;GO:0016020 K04585
gene-evm.TU.Chr12.1113 rna-evm.model.Chr12.1113 Chr12 35867103 35868740 PREDICTED: zinc finger MYM-type protein 2-like nan K24297
gene-evm.TU.Chr12.1114 rna-evm.model.Chr12.1114 Chr12 35869029 35871246 PREDICTED: glutamine-rich protein 1-like nan K24675
gene-evm.TU.Chr12.1115 rna-evm.model.Chr12.1115 Chr12 35896222 35945960 PREDICTED: Uncharacterized protein YfbL nan K19701
gene-evm.TU.Chr12.1116 rna-evm.model.Chr12.1116.1 Chr12 35965746 35983519 PREDICTED: Partitioning defective 3 homolog GO:0005515 K04237
gene-evm.TU.Chr12.1117 rna-evm.model.Chr12.1117 Chr12 36001726 36037254 PREDICTED: ATP-citrate synthase GO:0003824;GO:0046912;GO:0048037 K01648
gene-evm.TU.Chr12.1118 rna-evm.model.Chr12.1118 Chr12 36051654 36064661 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 5 nan K00710

For more detailed data, you can explore the Download section to access the full dataset.