CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.11 rna-evm.model.Chr12.11 Chr12 264233 282659 PREDICTED: Interferon-induced protein 44-like GO:0005525 K06946
gene-evm.TU.Chr12.110 rna-evm.model.Chr12.110 Chr12 3862840 3870906 PREDICTED: NAD(P)H-hydrate epimerase nan K17759
gene-evm.TU.Chr12.1100 rna-evm.model.Chr12.1100 Chr12 35466521 35470636 uncharacterized protein GO:0046872 nan
gene-evm.TU.Chr12.1101 rna-evm.model.Chr12.1101 Chr12 35470788 35471576 PREDICTED: myotubularin-related protein 10/11/12 nan K21037
gene-evm.TU.Chr12.1102 rna-evm.model.Chr12.1102 Chr12 35476512 35477078 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr12.1104 rna-evm.model.Chr12.1104 Chr12 35478649 35479457 PREDICTED: ESCRT-I complex subunit TSG101 nan K10804
gene-evm.TU.Chr12.1105 rna-evm.model.Chr12.1105 Chr12 35538175 35552311 uncharacterized protein nan nan
gene-evm.TU.Chr12.1106 rna-evm.model.Chr12.1106 Chr12 35552515 35563053 uncharacterized protein nan nan
gene-evm.TU.Chr12.1107 rna-evm.model.Chr12.1107 Chr12 35567991 35651998 PREDICTED: Calcitonin receptor GO:0004930;GO:0004948;GO:0007186;GO:0016020;GO:0016020 K04577
gene-evm.TU.Chr12.1108 rna-evm.model.Chr12.1108 Chr12 35690458 35704457 PREDICTED: Actin-related protein 3 GO:0004888;GO:0004930;GO:0005524;GO:0005885;GO:0007015;GO:0007166;GO:0007186;GO:0016020;GO:0034314 K18584

For more detailed data, you can explore the Download section to access the full dataset.