CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1088 rna-evm.model.Chr12.1088 Chr12 35204737 35205228 PREDICTED: Protein PELPK1 nan K10432
gene-evm.TU.Chr12.1089 rna-evm.model.Chr12.1089 Chr12 35232129 35250462 PREDICTED: Sodium-driven chloride bicarbonate exchanger GO:0005452;GO:0006820;GO:0008509;GO:0016020;GO:0016020 K13859
gene-evm.TU.Chr12.109 rna-evm.model.Chr12.109 Chr12 3835917 3854929 PREDICTED: Ceramide synthase 2 GO:0016020 K23727
gene-evm.TU.Chr12.1090 rna-evm.model.Chr12.1090 Chr12 35265617 35270123 PREDICTED: Copine family protein 2 nan K16280
gene-evm.TU.Chr12.1091 rna-evm.model.Chr12.1091 Chr12 35276604 35281110 PREDICTED: Copine family protein 2 nan K16280
gene-evm.TU.Chr12.1092 rna-evm.model.Chr12.1092 Chr12 35281496 35296565 PREDICTED: Glycosyltransferase-like domain-containing protein 1 nan K14335
gene-evm.TU.Chr12.1095 rna-evm.model.Chr12.1095 Chr12 35378706 35460208 PREDICTED: Fatty acid amide hydrolase 1 nan K15528
gene-evm.TU.Chr12.1096 rna-evm.model.Chr12.1096 Chr12 35425274 35430043 PREDICTED: THAP domain-containing protein 11 GO:0003676 K23211
gene-evm.TU.Chr12.1097 rna-evm.model.Chr12.1097 Chr12 35430608 35436450 PREDICTED: Inhibitor of growth protein 3 nan K11396
gene-evm.TU.Chr12.1099 rna-evm.model.Chr12.1099 Chr12 35450628 35465259 uncharacterized protein nan K12316

For more detailed data, you can explore the Download section to access the full dataset.