CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1079 rna-evm.model.Chr12.1079 Chr12 35041000 35064479 PREDICTED: Testis-expressed protein 10 homolog nan K14827
gene-evm.TU.Chr12.108 rna-evm.model.Chr12.108 Chr12 3802719 3807032 PREDICTED: ceramide synthetase [EC:2.3.1.24] nan K24621
gene-evm.TU.Chr12.1080 rna-evm.model.Chr12.1080 Chr12 35072679 35074962 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0051260 K21922
gene-evm.TU.Chr12.1081 rna-evm.model.Chr12.1081 Chr12 35081132 35095452 uncharacterized protein GO:0005515;GO:0007165 K10130
gene-evm.TU.Chr12.1082 rna-evm.model.Chr12.1082 Chr12 35098148 35102985 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr12.1083 rna-evm.model.Chr12.1083 Chr12 35106376 35132115 PREDICTED: Homologous-pairing protein 2 homolog GO:0007131 K06695
gene-evm.TU.Chr12.1084 rna-evm.model.Chr12.1084 Chr12 35136124 35156073 PREDICTED: 2-hydroxyacyl-CoA lyase 1 GO:0000287;GO:0003824;GO:0030976 K12261
gene-evm.TU.Chr12.1085 rna-evm.model.Chr12.1085 Chr12 35163977 35165008 PREDICTED: Transposable element Tcb1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr12.1086 rna-evm.model.Chr12.1086 Chr12 35159003 35186247 PREDICTED: GTP-binding protein 10 GO:0005525 K03979
gene-evm.TU.Chr12.1087 rna-evm.model.Chr12.1087 Chr12 35200452 35201487 PREDICTED: Neurogenic differentiation factor 6-A GO:0006355;GO:0046983;GO:0048666 K09080

For more detailed data, you can explore the Download section to access the full dataset.