CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1069 rna-evm.model.Chr12.1069 Chr12 34914009 34929307 PREDICTED: Esterase OVCA2 nan K06999
gene-evm.TU.Chr12.1070 rna-evm.model.Chr12.1070 Chr12 34937463 34945122 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr12.1071 rna-evm.model.Chr12.1071 Chr12 34949268 34952554 PREDICTED: Kelch-like protein 41 GO:0005515 K10473
gene-evm.TU.Chr12.1072 rna-evm.model.Chr12.1072 Chr12 34956286 34962541 PREDICTED: Acetylcholine receptor subunit alpha GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.1073 rna-evm.model.Chr12.1073 Chr12 34962757 34972710 PREDICTED: Steryl-sulfatase GO:0008484 K01131
gene-evm.TU.Chr12.1074 rna-evm.model.Chr12.1074 Chr12 34979257 35006486 PREDICTED: ATP-dependent RNA helicase DHX8 GO:0003676;GO:0004386;GO:0005524 K12818
gene-evm.TU.Chr12.1075 rna-evm.model.Chr12.1075 Chr12 35010976 35018697 uncharacterized protein nan K16505
gene-evm.TU.Chr12.1076 rna-evm.model.Chr12.1076 Chr12 35022809 35024338 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.1077 rna-evm.model.Chr12.1077 Chr12 35026263 35029437 uncharacterized protein nan K27316
gene-evm.TU.Chr12.1078 rna-evm.model.Chr12.1078 Chr12 35030931 35034111 PREDICTED: Vitelline membrane outer layer protein 1 homolog nan K25745

For more detailed data, you can explore the Download section to access the full dataset.