CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1059 rna-evm.model.Chr12.1059 Chr12 34647871 34722336 PREDICTED: SCO-spondin GO:0005515 K20053
gene-evm.TU.Chr12.106 rna-evm.model.Chr12.106 Chr12 3727279 3727815 PREDICTED: Tctex1 domain-containing protein 1 nan K25421
gene-evm.TU.Chr12.1060 rna-evm.model.Chr12.1060 Chr12 34745649 34750631 uncharacterized protein nan K16196
gene-evm.TU.Chr12.1061 rna-evm.model.Chr12.1061 Chr12 34770949 34772634 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr12.1062 rna-evm.model.Chr12.1062 Chr12 34776962 34778644 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr12.1063 rna-evm.model.Chr12.1063 Chr12 34783677 34785359 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr12.1064 rna-evm.model.Chr12.1064 Chr12 34787733 34792478 PREDICTED: Tubulin alpha chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr12.1065 rna-evm.model.Chr12.1065 Chr12 34805168 34870953 PREDICTED: Adenylate cyclase type 5 GO:0004016;GO:0005886;GO:0006171;GO:0009190;GO:0016849;GO:0035556 K08045
gene-evm.TU.Chr12.1067 rna-evm.model.Chr12.1067 Chr12 34897240 34906032 PREDICTED: Solute carrier family 23 member 2 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.1068 rna-evm.model.Chr12.1068 Chr12 34906204 34913549 PREDICTED: Actin-related protein 3 GO:0005524;GO:0005885;GO:0007015;GO:0034314 K18584

For more detailed data, you can explore the Download section to access the full dataset.