CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1048 rna-evm.model.Chr12.1048 Chr12 34359076 34362387 PREDICTED: aubergine nan K10421
gene-evm.TU.Chr12.1049 rna-evm.model.Chr12.1049 Chr12 34363458 34398167 PREDICTED: Splicing factor 3B subunit 1 GO:0000245;GO:0003729 K12828
gene-evm.TU.Chr12.105 rna-evm.model.Chr12.105 Chr12 3721712 3722890 PREDICTED: AH receptor-interacting protein nan K22905
gene-evm.TU.Chr12.1050 rna-evm.model.Chr12.1050 Chr12 34403068 34413551 PREDICTED: Glycine receptor subunit alphaZ1 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05194
gene-evm.TU.Chr12.1051 rna-evm.model.Chr12.1051 Chr12 34477806 34480462 PREDICTED: Glycine receptor subunit alpha-2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05194
gene-evm.TU.Chr12.1054 rna-evm.model.Chr12.1054 Chr12 34543135 34559864 PREDICTED: Glutamate-gated chloride channel GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05194
gene-evm.TU.Chr12.1055 rna-evm.model.Chr12.1055 Chr12 34565647 34570966 PREDICTED: Collagen alpha-2(XI) chain nan K13884
gene-evm.TU.Chr12.1056 rna-evm.model.Chr12.1056 Chr12 34581203 34586979 PREDICTED: Collagen alpha-5(VI) chain nan K24214
gene-evm.TU.Chr12.1057 rna-evm.model.Chr12.1057 Chr12 34603029 34613294 PREDICTED: Multidrug resistance-associated protein 1 GO:0005524;GO:0016020;GO:0042626;GO:0055085 K05667
gene-evm.TU.Chr12.1058 rna-evm.model.Chr12.1058 Chr12 34614617 34635470 PREDICTED: Multidrug resistance-associated protein 1 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05667

For more detailed data, you can explore the Download section to access the full dataset.