CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1037 rna-evm.model.Chr12.1037 Chr12 34121472 34128566 PREDICTED: Probable serine racemase nan K12235
gene-evm.TU.Chr12.1038 rna-evm.model.Chr12.1038 Chr12 34141337 34194664 PREDICTED: Sialin GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr12.104 rna-evm.model.Chr12.104 Chr12 3716126 3717304 PREDICTED: AH receptor-interacting protein nan K22905
gene-evm.TU.Chr12.1040 rna-evm.model.Chr12.1040 Chr12 34213205 34213785 PREDICTED: MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5 nan K12302
gene-evm.TU.Chr12.1041 rna-evm.model.Chr12.1041 Chr12 34215013 34224482 PREDICTED: Arylsulfatase B GO:0008484 K12375
gene-evm.TU.Chr12.1042 rna-evm.model.Chr12.1042 Chr12 34228987 34241755 PREDICTED: VAO-type flavoprotein oxidase VAO615 GO:0016491;GO:0050660;GO:0055114;GO:0071949 K26080
gene-evm.TU.Chr12.1043 rna-evm.model.Chr12.1043 Chr12 34253808 34273850 PREDICTED: VAO-type flavoprotein oxidase VAO615 GO:0016491;GO:0050660;GO:0055114;GO:0071949 K26080
gene-evm.TU.Chr12.1044 rna-evm.model.Chr12.1044 Chr12 34279951 34308591 PREDICTED: Ceramide synthase 5 GO:0003677;GO:0016020;GO:0016702;GO:0055114 K10252
gene-evm.TU.Chr12.1045 rna-evm.model.Chr12.1045 Chr12 34313994 34332602 PREDICTED: Death-associated protein kinase 1 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K21435
gene-evm.TU.Chr12.1047 rna-evm.model.Chr12.1047 Chr12 34349126 34363401 PREDICTED: Coenzyme Q-binding protein COQ10 homolog B, mitochondrial nan K18588

For more detailed data, you can explore the Download section to access the full dataset.