CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1027 rna-evm.model.Chr12.1027 Chr12 33761969 33782999 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 5 nan K00710
gene-evm.TU.Chr12.1028 rna-evm.model.Chr12.1028 Chr12 33802338 33830963 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 5 nan K00710
gene-evm.TU.Chr12.1029 rna-evm.model.Chr12.1029 Chr12 33849763 33904539 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 5 nan K00710
gene-evm.TU.Chr12.103 rna-evm.model.Chr12.103 Chr12 3693078 3708089 PREDICTED: Ciliogenesis-associated TTC17-interacting protein nan K25788
gene-evm.TU.Chr12.1030 rna-evm.model.Chr12.1030 Chr12 33939701 33963488 PREDICTED: Transposable element Tcb1 transposase GO:0003677;GO:0006313;GO:0006355;GO:0015074 K07494
gene-evm.TU.Chr12.1031 rna-evm.model.Chr12.1031 Chr12 33990042 33991378 PREDICTED: importin-4 nan K24835
gene-evm.TU.Chr12.1033 rna-evm.model.Chr12.1033 Chr12 34024173 34034218 PREDICTED: Probable serine racemase nan K12235
gene-evm.TU.Chr12.1034 rna-evm.model.Chr12.1034 Chr12 34051581 34059892 PREDICTED: Sialin GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr12.1035 rna-evm.model.Chr12.1035 Chr12 34066571 34094646 PREDICTED: Arylsulfatase B GO:0008484;GO:0016020;GO:0055085 K12375
gene-evm.TU.Chr12.1036 rna-evm.model.Chr12.1036 Chr12 34113495 34120127 PREDICTED: Ovarian abundant message protein nan K14192

For more detailed data, you can explore the Download section to access the full dataset.