CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1018 rna-evm.model.Chr12.1018 Chr12 33514190 33521416 PREDICTED: chitin synthase [EC:2.4.1.16] nan nan
gene-evm.TU.Chr12.1019 rna-evm.model.Chr12.1019 Chr12 33525824 33543260 PREDICTED: F-box/LRR-repeat protein 18 nan K10284
gene-evm.TU.Chr12.102 rna-evm.model.Chr12.102 Chr12 3665684 3692304 PREDICTED: Collagen alpha-1(XII) chain GO:0005576;GO:0006030;GO:0008061 K06238
gene-evm.TU.Chr12.1020 rna-evm.model.Chr12.1020 Chr12 33550535 33555387 PREDICTED: Serine/threonine-protein kinase 16 GO:0004672;GO:0005524;GO:0006468 K08856
gene-evm.TU.Chr12.1021 rna-evm.model.Chr12.1021 Chr12 33589419 33625544 PREDICTED: Integrin alpha-4 GO:0007155;GO:0008305 K06483
gene-evm.TU.Chr12.1022 rna-evm.model.Chr12.1022.1 Chr12 33639820 33651052 PREDICTED: NLR family CARD domain-containing protein 3 GO:0005515 K10165
gene-evm.TU.Chr12.1023 rna-evm.model.Chr12.1023 Chr12 33675872 33677575 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr12.1024 rna-evm.model.Chr12.1024.1 Chr12 33680176 33685687 PREDICTED: Oxidoreductase NAD-binding domain-containing protein 1 GO:0016491;GO:0055114 K02613
gene-evm.TU.Chr12.1025 rna-evm.model.Chr12.1025 Chr12 33688184 33698561 PREDICTED: Aldehyde dehydrogenase family 9 member A1-A GO:0016491;GO:0055114 K00149
gene-evm.TU.Chr12.1026 rna-evm.model.Chr12.1026 Chr12 33703961 33732707 PREDICTED: Rac GTPase-activating protein 1 GO:0007165;GO:0035556 K16733

For more detailed data, you can explore the Download section to access the full dataset.