CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1007 rna-evm.model.Chr12.1007 Chr12 33120809 33121765 PREDICTED: Zinc finger protein 98 GO:0003676 K09228
gene-evm.TU.Chr12.1009 rna-evm.model.Chr12.1009 Chr12 33128812 33130070 PREDICTED: Zinc finger protein 271 GO:0003676 K09228
gene-evm.TU.Chr12.101 rna-evm.model.Chr12.101 Chr12 3654974 3656850 PREDICTED: ORM1-like protein 3 GO:0005789;GO:0006672;GO:0016020;GO:0090156 nan
gene-evm.TU.Chr12.1011 rna-evm.model.Chr12.1011 Chr12 33264040 33273096 PREDICTED: cation-dependent mannose-6-phosphate receptor nan K10089
gene-evm.TU.Chr12.1012 rna-evm.model.Chr12.1012 Chr12 33275972 33313448 PREDICTED: cation-dependent mannose-6-phosphate receptor nan K10089
gene-evm.TU.Chr12.1013 rna-evm.model.Chr12.1013 Chr12 33316256 33347708 PREDICTED: CD109 antigen GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr12.1014 rna-evm.model.Chr12.1014 Chr12 33354766 33386219 PREDICTED: Ovostatin GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr12.1015 rna-evm.model.Chr12.1015 Chr12 33452759 33470146 PREDICTED: Gamma-aminobutyric acid type B receptor subunit 1 GO:0004930;GO:0004965;GO:0007186;GO:0016020 K04615
gene-evm.TU.Chr12.1016 rna-evm.model.Chr12.1016 Chr12 33471338 33472106 PREDICTED: solute carrier family 5 (sodium-dependent multivitamin transporter), member 6 nan K01460
gene-evm.TU.Chr12.1017 rna-evm.model.Chr12.1017.1 Chr12 33483788 33502164 PREDICTED: Protein white GO:0005524;GO:0016020;GO:0016887 K21396

For more detailed data, you can explore the Download section to access the full dataset.