CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.996 rna-evm.model.Chr11.996 Chr11 38470441 38544073 PREDICTED: RNA polymerase II transcriptional coactivator KIWI GO:0003677;GO:0006355 K25815
gene-evm.TU.Chr11.997 rna-evm.model.Chr11.997 Chr11 38548787 38577843 PREDICTED: Dual oxidase 2 GO:0005509;GO:0016174;GO:0016491;GO:0050665;GO:0055114 K13411
gene-evm.TU.Chr11.998 rna-evm.model.Chr11.998 Chr11 38579284 38583035 PREDICTED: 28S ribosomal protein S36, mitochondrial nan K17414
gene-evm.TU.Chr11.999 rna-evm.model.Chr11.999 Chr11 38592095 38606450 PREDICTED: m7GpppN-mRNA hydrolase GO:0003723;GO:0016787;GO:0030145 K12613
gene-evm.TU.Chr12.1 rna-evm.model.Chr12.1 Chr12 45509 75113 PREDICTED: Gamma-aminobutyric acid type B receptor subunit 1 GO:0004930;GO:0004965;GO:0007186;GO:0016020 K04615
gene-evm.TU.Chr12.10 rna-evm.model.Chr12.10 Chr12 260166 261794 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr12.100 rna-evm.model.Chr12.100 Chr12 3638273 3653751 PREDICTED: G protein-coupled receptor Mth (Methuselah protein) nan K17418
gene-evm.TU.Chr12.1000 rna-evm.model.Chr12.1000 Chr12 33060007 33067233 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr12.1004 rna-evm.model.Chr12.1004 Chr12 33079812 33083658 PREDICTED: Thrombospondin-1 nan K06841
gene-evm.TU.Chr12.1006 rna-evm.model.Chr12.1006 Chr12 33113294 33162055 PREDICTED: Zinc finger protein 271 GO:0003676 K09228

For more detailed data, you can explore the Download section to access the full dataset.