CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.983 rna-evm.model.Chr11.983 Chr11 38260171 38277072 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr11.984 rna-evm.model.Chr11.984 Chr11 38280227 38288335 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase GO:0004842 K22371
gene-evm.TU.Chr11.988 rna-evm.model.Chr11.988 Chr11 38341266 38350564 PREDICTED: 28S ribosomal protein S16, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02959
gene-evm.TU.Chr11.989 rna-evm.model.Chr11.989 Chr11 38361494 38368422 PREDICTED: COMM domain-containing protein 10 nan K22566
gene-evm.TU.Chr11.990 rna-evm.model.Chr11.990 Chr11 38374237 38389885 PREDICTED: Coatomer subunit epsilon GO:0005198;GO:0006890 K17268
gene-evm.TU.Chr11.991 rna-evm.model.Chr11.991 Chr11 38393911 38411060 PREDICTED: Scavenger receptor cysteine-rich type 1 protein M160 GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr11.992 rna-evm.model.Chr11.992 Chr11 38428759 38437604 PREDICTED: Solute carrier family 25 member 46 GO:0005741;GO:0090149 K03454
gene-evm.TU.Chr11.993 rna-evm.model.Chr11.993 Chr11 38440924 38446210 PREDICTED: Sorbitol dehydrogenase GO:0055114 K00008
gene-evm.TU.Chr11.994 rna-evm.model.Chr11.994 Chr11 38450967 38459290 PREDICTED: Sorbitol dehydrogenase GO:0016491;GO:0055114 K00008
gene-evm.TU.Chr11.995 rna-evm.model.Chr11.995 Chr11 38461982 38468063 PREDICTED: Activated RNA polymerase II transcriptional coactivator p15 GO:0003677;GO:0006355 K25815

For more detailed data, you can explore the Download section to access the full dataset.