CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.95 rna-evm.model.Chr11.95 Chr11 4398654 4401595 PREDICTED: AF4/FMR2 family member 4 nan K04223
gene-evm.TU.Chr11.950 rna-evm.model.Chr11.950.1 Chr11 37228457 37301184 PREDICTED: Adenosine deaminase-like protein GO:0019239 K01488
gene-evm.TU.Chr11.951 rna-evm.model.Chr11.951 Chr11 37305570 37327732 uncharacterized protein GO:0005515;GO:0007165 K03054
gene-evm.TU.Chr11.952 rna-evm.model.Chr11.952 Chr11 37343785 37346797 PREDICTED: LysM and putative peptidoglycan-binding domain-containing protein 3 nan K08307
gene-evm.TU.Chr11.953 rna-evm.model.Chr11.953 Chr11 37350173 37351054 uncharacterized protein nan nan
gene-evm.TU.Chr11.954 rna-evm.model.Chr11.954 Chr11 37361588 37361911 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan nan
gene-evm.TU.Chr11.955 rna-evm.model.Chr11.955 Chr11 37378744 37388762 PREDICTED: SHC-transforming protein 1 GO:0000187;GO:0005515;GO:0030971;GO:0035556 K06279
gene-evm.TU.Chr11.956 rna-evm.model.Chr11.956 Chr11 37397333 37402987 PREDICTED: 39S ribosomal protein S30, mitochondrial GO:0003735;GO:0005739;GO:0005840;GO:0006412 K17409
gene-evm.TU.Chr11.957 rna-evm.model.Chr11.957 Chr11 37407625 37417674 PREDICTED: Solute carrier family 22 member 5 GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr11.958 rna-evm.model.Chr11.958 Chr11 37419894 37422728 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.