CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.939 rna-evm.model.Chr11.939 Chr11 36801493 36802923 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K26201
gene-evm.TU.Chr11.94 rna-evm.model.Chr11.94 Chr11 4391734 4392270 PREDICTED: soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like nan K25474
gene-evm.TU.Chr11.942 rna-evm.model.Chr11.942 Chr11 36922777 37004128 PREDICTED: Focadhesin nan K04648
gene-evm.TU.Chr11.943 rna-evm.model.Chr11.943 Chr11 37008780 37038452 PREDICTED: Focadhesin nan nan
gene-evm.TU.Chr11.944 rna-evm.model.Chr11.944 Chr11 37040779 37044498 PREDICTED: Putative SERF-like protein nan K26089
gene-evm.TU.Chr11.945 rna-evm.model.Chr11.945 Chr11 37048112 37072247 PREDICTED: expansin nan K20628
gene-evm.TU.Chr11.946 rna-evm.model.Chr11.946 Chr11 37073777 37088578 PREDICTED: Heterogeneous nuclear ribonucleoprotein K GO:0003676;GO:0003677;GO:0003723;GO:0006357;GO:0006396 K12886
gene-evm.TU.Chr11.947 rna-evm.model.Chr11.947 Chr11 37099115 37102874 PREDICTED: Protein FAM81A nan K13582
gene-evm.TU.Chr11.948 rna-evm.model.Chr11.948 Chr11 37104628 37115490 PREDICTED: Protein FAM81B nan K16487
gene-evm.TU.Chr11.949 rna-evm.model.Chr11.949 Chr11 37124019 37214294 PREDICTED: Ras GTPase-activating-like protein IQGAP1 GO:0005515;GO:0043087 K16848

For more detailed data, you can explore the Download section to access the full dataset.