CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.911 rna-evm.model.Chr11.911 Chr11 35100892 35112337 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr11.912 rna-evm.model.Chr11.912 Chr11 35118110 35126889 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr11.913 rna-evm.model.Chr11.913 Chr11 35127073 35129850 PREDICTED: Scavenger receptor cysteine-rich domain superfamily protein GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr11.914 rna-evm.model.Chr11.914 Chr11 35130021 35131620 PREDICTED: Neurotrypsin GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr11.915 rna-evm.model.Chr11.915 Chr11 35135838 35139015 PREDICTED: Lysyl oxidase homolog 2 GO:0005044;GO:0016020 K00280
gene-evm.TU.Chr11.916 rna-evm.model.Chr11.916 Chr11 35139768 35142215 PREDICTED: Neurotrypsin GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr11.917 rna-evm.model.Chr11.917 Chr11 35142448 35144220 PREDICTED: Scavenger receptor cysteine-rich type 1 protein M130 GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr11.918 rna-evm.model.Chr11.918 Chr11 35144670 35183950 PREDICTED: Scavenger receptor cysteine-rich domain superfamily protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr11.919 rna-evm.model.Chr11.919 Chr11 35241998 35245653 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.92 rna-evm.model.Chr11.92 Chr11 4289385 4314438 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 3 GO:0008270;GO:0016579;GO:0004843 K11986

For more detailed data, you can explore the Download section to access the full dataset.