CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.821_evm.TU.Chr11.822 rna-evm.model.Chr11.821_evm.model.Chr11.822 Chr11 31151098 31158922 PREDICTED: Cilia- and flagella-associated protein 161 nan nan
gene-evm.TU.Chr11.823 rna-evm.model.Chr11.823 Chr11 31202763 31319133 PREDICTED: High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B GO:0004114;GO:0007165;GO:0008081 K18437
gene-evm.TU.Chr11.824 rna-evm.model.Chr11.824 Chr11 31322612 31327798 uncharacterized protein nan nan
gene-evm.TU.Chr11.826 rna-evm.model.Chr11.826 Chr11 31332149 31334679 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 nan K03006
gene-evm.TU.Chr11.827 rna-evm.model.Chr11.827 Chr11 31339628 31373206 PREDICTED: StAR-related lipid transfer protein 5 GO:0008289 K22291
gene-evm.TU.Chr11.828 rna-evm.model.Chr11.828 Chr11 31374025 31377794 PREDICTED: Death domain-containing protein CRADD GO:0002020;GO:0042981;GO:0070513 K02832
gene-evm.TU.Chr11.830 rna-evm.model.Chr11.830 Chr11 31383811 31386823 PREDICTED: Interferon alpha-inducible protein 27, mitochondrial GO:0016020 K26409
gene-evm.TU.Chr11.834 rna-evm.model.Chr11.834 Chr11 31437883 31448661 PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 nan nan
gene-evm.TU.Chr11.835 rna-evm.model.Chr11.835 Chr11 31450957 31452813 PREDICTED: Interferon alpha-inducible protein 27, mitochondrial GO:0016020 K26409
gene-evm.TU.Chr11.837 rna-evm.model.Chr11.837 Chr11 31560234 31561068 PREDICTED: coatomer subunit beta' nan K07532

For more detailed data, you can explore the Download section to access the full dataset.