CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.764 rna-evm.model.Chr11.764 Chr11 29262377 29270297 PREDICTED: Glucose dehydrogenase [FAD, quinone] GO:0016614;GO:0050660;GO:0055114 K00108
gene-evm.TU.Chr11.765 rna-evm.model.Chr11.765 Chr11 29271604 29286952 PREDICTED: Neuronal acetylcholine receptor subunit alpha-10 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04811
gene-evm.TU.Chr11.766 rna-evm.model.Chr11.766 Chr11 29295178 29296746 PREDICTED: Homeobox protein Meis2 GO:0003677;GO:0006355 K16670
gene-evm.TU.Chr11.767 rna-evm.model.Chr11.767 Chr11 29300605 29316401 PREDICTED: 26S proteasome regulatory subunit 6A GO:0005524 K03065
gene-evm.TU.Chr11.768 rna-evm.model.Chr11.768 Chr11 29318205 29361780 PREDICTED: Spatacsin nan K19026
gene-evm.TU.Chr11.77 rna-evm.model.Chr11.77 Chr11 3995841 4025583 PREDICTED: CREB-regulated transcription coactivator 1 GO:0005634;GO:0005737;GO:0008140;GO:0032793;GO:0051289 K15309
gene-evm.TU.Chr11.770 rna-evm.model.Chr11.770 Chr11 29392953 29418882 PREDICTED: Neuronal growth regulator 1 nan K06774
gene-evm.TU.Chr11.771 rna-evm.model.Chr11.771 Chr11 29425577 29457404 PREDICTED: Gelsolin (Fragment) GO:0051015 K08017
gene-evm.TU.Chr11.772 rna-evm.model.Chr11.772 Chr11 29470912 29539181 PREDICTED: Ras-specific guanine nucleotide-releasing factor 2 GO:0005085;GO:0005085;GO:0005515;GO:0007264;GO:0035023;GO:0046578 K12326
gene-evm.TU.Chr11.773 rna-evm.model.Chr11.773 Chr11 29570245 29571312 PREDICTED: solute carrier family 6 (neurotransmitter transporter) member 19 nan nan

For more detailed data, you can explore the Download section to access the full dataset.