CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.81 rna-evm.model.Chr11.81 Chr11 4100841 4101943 PREDICTED: Histidine N-acetyltransferase nan K22888
gene-evm.TU.Chr11.812 rna-evm.model.Chr11.812 Chr11 30853227 30853432 uncharacterized protein nan K09054
gene-evm.TU.Chr11.813 rna-evm.model.Chr11.813 Chr11 30853459 30853746 uncharacterized protein nan nan
gene-evm.TU.Chr11.814 rna-evm.model.Chr11.814 Chr11 30942021 30969374 PREDICTED: Tetratricopeptide repeat protein 24 nan K15178
gene-evm.TU.Chr11.815 rna-evm.model.Chr11.815 Chr11 30977120 30987987 PREDICTED: calreticulin nan K09892
gene-evm.TU.Chr11.816 rna-evm.model.Chr11.816 Chr11 30988595 30999006 PREDICTED: Probable UDP-sugar transporter protein SLC35A4 GO:0000139;GO:0015165;GO:0016020;GO:0090481 K15273
gene-evm.TU.Chr11.817 rna-evm.model.Chr11.817 Chr11 31007595 31063794 PREDICTED: Pro-interleukin-16 GO:0005515 K24058
gene-evm.TU.Chr11.818 rna-evm.model.Chr11.818 Chr11 31085158 31110388 PREDICTED: InaD-like protein GO:0005515 K06095
gene-evm.TU.Chr11.819 rna-evm.model.Chr11.819 Chr11 31113010 31127644 PREDICTED: PDZ domain-containing protein 2 GO:0005515 K24058
gene-evm.TU.Chr11.820 rna-evm.model.Chr11.820 Chr11 31140677 31147141 PREDICTED: Golgi phosphoprotein 3 GO:0070273 K15620

For more detailed data, you can explore the Download section to access the full dataset.