CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.876 rna-evm.model.Chr11.876 Chr11 33986101 34003636 PREDICTED: Myelin expression factor 2 GO:0003676 K24992
gene-evm.TU.Chr11.878 rna-evm.model.Chr11.878 Chr11 34035217 34050568 PREDICTED: Potassium voltage-gated channel protein Shaw GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr11.879 rna-evm.model.Chr11.879 Chr11 34069941 34071683 PREDICTED: Temptin nan nan
gene-evm.TU.Chr11.88 rna-evm.model.Chr11.88 Chr11 4195264 4208681 uncharacterized protein nan K22888
gene-evm.TU.Chr11.881 rna-evm.model.Chr11.881 Chr11 34188828 34208751 PREDICTED: Neuronal acetylcholine receptor subunit alpha-9 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04810
gene-evm.TU.Chr11.882 rna-evm.model.Chr11.882 Chr11 34209822 34211997 PREDICTED: Sodium-coupled monocarboxylate transporter 1 GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr11.883 rna-evm.model.Chr11.883 Chr11 34213016 34219340 PREDICTED: P30 adhesin GO:0005576;GO:0030414 K23638
gene-evm.TU.Chr11.884 rna-evm.model.Chr11.884 Chr11 34223208 34242023 PREDICTED: Tyrosine-protein phosphatase non-receptor type 5 GO:0004725;GO:0006470;GO:0016311;GO:0016791 K18032
gene-evm.TU.Chr11.885 rna-evm.model.Chr11.885 Chr11 34278537 34295843 PREDICTED: Tyrosine-protein phosphatase non-receptor type 9 GO:0004725;GO:0006470;GO:0016311;GO:0016791 K18038
gene-evm.TU.Chr11.886 rna-evm.model.Chr11.886 Chr11 34296038 34303922 PREDICTED: Ubiquitin-conjugating enzyme E2 R1 nan K02207

For more detailed data, you can explore the Download section to access the full dataset.