CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.863 rna-evm.model.Chr11.863 Chr11 33089430 33092657 uncharacterized protein nan nan
gene-evm.TU.Chr11.864 rna-evm.model.Chr11.864 Chr11 33092679 33093539 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676 K07494
gene-evm.TU.Chr11.865 rna-evm.model.Chr11.865 Chr11 33252553 33253477 PREDICTED: Steroid 17-alpha-hydroxylase/17,20 lyase GO:0005506;GO:0016705;GO:0020037;GO:0055114 K00512
gene-evm.TU.Chr11.866 rna-evm.model.Chr11.866 Chr11 33262499 33294658 PREDICTED: zinc finger BED domain-containing protein 1-like nan K24637
gene-evm.TU.Chr11.867 rna-evm.model.Chr11.867 Chr11 33294774 33296259 PREDICTED: Zinc finger BED domain-containing protein 1 GO:0046983 K24637
gene-evm.TU.Chr11.868 rna-evm.model.Chr11.868.1 Chr11 33600640 33650442 PREDICTED: Zwei Ig domain protein zig-8 nan K06774
gene-evm.TU.Chr11.870 rna-evm.model.Chr11.870 Chr11 33708728 33721302 PREDICTED: Leucine-rich repeats and immunoglobulin-like domains protein 1 nan K06774
gene-evm.TU.Chr11.873 rna-evm.model.Chr11.873 Chr11 33936099 33936350 PREDICTED: tigger transposable element-derived protein 6-like nan K11496
gene-evm.TU.Chr11.874 rna-evm.model.Chr11.874 Chr11 33936373 33936654 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676 K11496
gene-evm.TU.Chr11.875 rna-evm.model.Chr11.875 Chr11 33936698 33949295 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676 K11496

For more detailed data, you can explore the Download section to access the full dataset.