CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.849 rna-evm.model.Chr11.849 Chr11 32385889 32399772 PREDICTED: Alpha- and gamma-adaptin-binding protein p34 nan K23878
gene-evm.TU.Chr11.850 rna-evm.model.Chr11.850.1 Chr11 32399852 32481788 PREDICTED: IQ domain-containing protein H GO:0005515 K24842
gene-evm.TU.Chr11.851 rna-evm.model.Chr11.851 Chr11 32491720 32501346 PREDICTED: Maspardin nan K19367
gene-evm.TU.Chr11.852 rna-evm.model.Chr11.852 Chr11 32501421 32505588 PREDICTED: Outer dense fiber protein 3 nan K25636
gene-evm.TU.Chr11.853 rna-evm.model.Chr11.853 Chr11 32506294 32508215 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr11.856 rna-evm.model.Chr11.856 Chr11 32540632 32543553 PREDICTED: Chorion peroxidase GO:0004601;GO:0048477 K19511
gene-evm.TU.Chr11.857 rna-evm.model.Chr11.857 Chr11 32586488 32599481 PREDICTED: Steroid 17-alpha-hydroxylase/17,20 lyase GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr11.858 rna-evm.model.Chr11.858 Chr11 32611213 32629698 uncharacterized protein nan K05226
gene-evm.TU.Chr11.859_evm.TU.Chr11.860 rna-evm.model.Chr11.859_evm.model.Chr11.860 Chr11 32908769 32958176 PREDICTED: Zwei Ig domain protein zig-8 nan K06774
gene-evm.TU.Chr11.862 rna-evm.model.Chr11.862 Chr11 33036731 33051816 PREDICTED: Leucine-rich repeats and immunoglobulin-like domains protein 1 nan K06772

For more detailed data, you can explore the Download section to access the full dataset.