CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.774 rna-evm.model.Chr11.774 Chr11 29571472 29572029 PREDICTED: solute carrier family 6 (neurotransmitter transporter) member 19 nan K06808
gene-evm.TU.Chr11.775 rna-evm.model.Chr11.775 Chr11 29573952 29574437 PREDICTED: solute carrier family 6 (neurotransmitter transporter) member 19 nan nan
gene-evm.TU.Chr11.776 rna-evm.model.Chr11.776 Chr11 29618563 29625857 PREDICTED: Protein Wnt-4 GO:0005102;GO:0005576;GO:0007275;GO:0016055 K00408
gene-evm.TU.Chr11.777 rna-evm.model.Chr11.777 Chr11 29640276 29648367 PREDICTED: F-box only protein 33 GO:0005515;GO:0019005;GO:0031146 K10310
gene-evm.TU.Chr11.778 rna-evm.model.Chr11.778.2 Chr11 29656891 29693094 PREDICTED: Microtubule-associated protein futsch GO:0000226;GO:0005874;GO:0008017 K10429
gene-evm.TU.Chr11.779 rna-evm.model.Chr11.779 Chr11 29701550 29730891 PREDICTED: Ubiquitin-like modifier-activating enzyme 6 GO:0036211;GO:0008641 K10699
gene-evm.TU.Chr11.78 rna-evm.model.Chr11.78 Chr11 4034242 4035946 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr11.783 rna-evm.model.Chr11.783 Chr11 29760347 29778459 PREDICTED: Neuronal acetylcholine receptor subunit alpha-10 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.785 rna-evm.model.Chr11.785 Chr11 29815443 29819476 PREDICTED: ATP synthase subunit s, mitochondrial nan K07554
gene-evm.TU.Chr11.786 rna-evm.model.Chr11.786 Chr11 29821856 29878742 PREDICTED: DIS3-like exonuclease 1 GO:0000175;GO:0003723;GO:0004540;GO:0016075;GO:0090503 K18681

For more detailed data, you can explore the Download section to access the full dataset.