CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.787 rna-evm.model.Chr11.787 Chr11 29881570 29885501 PREDICTED: Cytochrome c oxidase subunit 5A, mitochondrial GO:0004129;GO:0005743 K02264
gene-evm.TU.Chr11.788 rna-evm.model.Chr11.788 Chr11 29887117 29891927 PREDICTED: E3 SUMO-protein ligase KIAA1586 nan K24642
gene-evm.TU.Chr11.789 rna-evm.model.Chr11.789 Chr11 29892085 29910756 PREDICTED: Epoxide hydrolase 4 GO:0003824 K22369
gene-evm.TU.Chr11.79 rna-evm.model.Chr11.79 Chr11 4042956 4050056 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr11.790 rna-evm.model.Chr11.790 Chr11 29918624 29943467 PREDICTED: General transcriptional corepressor TUP1 GO:0005515 K24736
gene-evm.TU.Chr11.793 rna-evm.model.Chr11.793 Chr11 30065881 30071631 PREDICTED: Proteasome subunit alpha type-4 GO:0004175;GO:0004298;GO:0005839;GO:0006511;GO:0019773;GO:0051603 K02728
gene-evm.TU.Chr11.795 rna-evm.model.Chr11.795 Chr11 30081695 30086315 PREDICTED: Protein PRRC1-A nan K01529
gene-evm.TU.Chr11.796 rna-evm.model.Chr11.796 Chr11 30122020 30140595 PREDICTED: Protein mono-ADP-ribosyltransferase PARP16 GO:0003950 K00774
gene-evm.TU.Chr11.797 rna-evm.model.Chr11.797.2 Chr11 30399233 30424970 PREDICTED: Zwei Ig domain protein zig-8 nan K06774
gene-evm.TU.Chr11.798 rna-evm.model.Chr11.798 Chr11 30426112 30446803 PREDICTED: Integrator complex subunit 14 GO:0032039 K07114

For more detailed data, you can explore the Download section to access the full dataset.