CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.838 rna-evm.model.Chr11.838 Chr11 31562919 31574883 uncharacterized protein nan K23222
gene-evm.TU.Chr11.839 rna-evm.model.Chr11.839 Chr11 31911891 31929618 PREDICTED: Zwei Ig domain protein zig-8 nan K06774
gene-evm.TU.Chr11.84 rna-evm.model.Chr11.84 Chr11 4154753 4165739 PREDICTED: Histidine N-acetyltransferase nan K22888
gene-evm.TU.Chr11.840 rna-evm.model.Chr11.840 Chr11 32056309 32056608 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr11.842 rna-evm.model.Chr11.842 Chr11 32309160 32321311 uncharacterized protein nan nan
gene-evm.TU.Chr11.843 rna-evm.model.Chr11.843 Chr11 32321432 32327843 uncharacterized protein nan K06089
gene-evm.TU.Chr11.844 rna-evm.model.Chr11.844 Chr11 32332691 32336594 PREDICTED: ganglioside GM2 activator nan K12383
gene-evm.TU.Chr11.845 rna-evm.model.Chr11.845 Chr11 32348368 32351714 PREDICTED: calpain-5 [EC:3.4.22.-] nan K06449
gene-evm.TU.Chr11.846 rna-evm.model.Chr11.846 Chr11 32356252 32360907 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr11.848 rna-evm.model.Chr11.848 Chr11 32381438 32384601 PREDICTED: Neugrin nan K23496

For more detailed data, you can explore the Download section to access the full dataset.