CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.799 rna-evm.model.Chr11.799 Chr11 30459075 30466002 PREDICTED: Protein fem-1 homolog C GO:0005515 K25805
gene-evm.TU.Chr11.8 rna-evm.model.Chr11.8 Chr11 407997 418942 uncharacterized protein nan nan
gene-evm.TU.Chr11.80 rna-evm.model.Chr11.80 Chr11 4087651 4093265 PREDICTED: Immunoglobulin superfamily DCC subclass member 4 GO:0005515 K22657
gene-evm.TU.Chr11.800 rna-evm.model.Chr11.800 Chr11 30474361 30479528 PREDICTED: Myogenesis-regulating glycosidase GO:0004553;GO:0005975 K24727
gene-evm.TU.Chr11.801 rna-evm.model.Chr11.801 Chr11 30481518 30507323 PREDICTED: Elongation factor-like GTPase 1 GO:0003924;GO:0005525 K14536
gene-evm.TU.Chr11.802 rna-evm.model.Chr11.802 Chr11 30510086 30524080 PREDICTED: Ceroid-lipofuscinosis neuronal protein 6 homolog nan K12359
gene-evm.TU.Chr11.803 rna-evm.model.Chr11.803 Chr11 30525931 30536862 PREDICTED: Tripartite motif-containing protein 59 GO:0008270 K12028
gene-evm.TU.Chr11.804 rna-evm.model.Chr11.804 Chr11 30538078 30546591 PREDICTED: Tripartite motif-containing protein 2 GO:0008270 K11997
gene-evm.TU.Chr11.807 rna-evm.model.Chr11.807 Chr11 30580787 30581897 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr11.808 rna-evm.model.Chr11.808 Chr11 30597434 30643673 PREDICTED: Arrestin domain-containing protein 3 nan K26229

For more detailed data, you can explore the Download section to access the full dataset.